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PyPI - Python Version PyPI - Format PyPI - Status

A Python3.6.1+ package to trim and extract flags from FASTA and FASTQ files.

Requirements

fastx-barber has been tested with Python 3.6.1, 3.7, and 3.8. We recommend installing it using pipx (see below) to avoid dependency conflicts with other packages. The packages it depends on are listed in our dependency graph. We use poetry to handle our dependencies.

Install

We recommend installing fastx-barber using pipx. Check how to install pipx here if you don’t have it yet! Once you have pipx ready on your system, install the latest stable release of fastx-barber by running: pipx install fastx-barber. If you see the stars (✨ 🌟 ✨), then the installation went well!

Features

Usage

Run:

Add -h to see the full help page of a command or visit the usage page!

Contributing

We welcome any contributions to fastx-barber. In short, we use black to standardize code format. Any code change also needs to pass mypy checks. For more details, please refer to our contribution guidelines if this is your first time contributing! Also, check out our code of conduct.

License

MIT License - Copyright (c) 2020 Gabriele Girelli